3D structure

PDB id
8G6Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe
Experimental method
ELECTRON MICROSCOPY
Resolution
2.09 Å

Loop

Sequence
GGACCAUC
Length
8 nucleotides
Bulged bases
8G6Y|1|a|G|411
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8G6Y_019 not in the Motif Atlas
Homologous match to HL_5J7L_146
Geometric discrepancy: 0.0711
The information below is about HL_5J7L_146
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_30680.3
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
15

Unit IDs

8G6Y|1|a|G|410
8G6Y|1|a|G|411
8G6Y|1|a|A|412
8G6Y|1|a|C|413
8G6Y|1|a|C|414
8G6Y|1|a|A|415
8G6Y|1|a|U|416
8G6Y|1|a|C|417

Current chains

Chain a
23S rRNA

Nearby chains

Chain k
50S ribosomal protein L15

Coloring options:


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