3D structure

PDB id
8G6Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe
Experimental method
ELECTRON MICROSCOPY
Resolution
2.09 Å

Loop

Sequence
GGUAACAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8G6Y_027 not in the Motif Atlas
Homologous match to HL_5J7L_154
Geometric discrepancy: 0.1406
The information below is about HL_5J7L_154
Detailed Annotation
GNRA wlth tandem sheared
Broad Annotation
No text annotation
Motif group
HL_81538.2
Basepair signature
cWW-tSH-F-F-F-F
Number of instances in this motif group
16

Unit IDs

8G6Y|1|a|G|712
8G6Y|1|a|G|713
8G6Y|1|a|U|714
8G6Y|1|a|A|715
8G6Y|1|a|A|716
8G6Y|1|a|C|717
8G6Y|1|a|A|718
8G6Y|1|a|C|719

Current chains

Chain a
23S rRNA

Nearby chains

Chain c
50S ribosomal protein L2

Coloring options:


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