HL_8G6Y_045

3D structure

PDB id

8G6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8G6Y|1|a|U|1693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G6Y_045 not in the Motif Atlas

Geometric match to HL_5J7L_175

Geometric discrepancy: 0.0564

The information below is about HL_5J7L_175

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8G6Y|1|a|C|1691
8G6Y|1|a|U|1692
8G6Y|1|a|U|1693
8G6Y|1|a|C|1694
8G6Y|1|a|G|1695
8G6Y|1|a|G|1696

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2