HL_8G6Y_053

3D structure

PDB id

8G6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

GUG(6MZ)AGAUGC

Length

10 nucleotides

Bulged bases

8G6Y|1|a|A|2031, 8G6Y|1|a|G|2032

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G6Y_053 not in the Motif Atlas

Homologous match to HL_5J7L_183

Geometric discrepancy: 0.0621

The information below is about HL_5J7L_183

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

8

Unit IDs

8G6Y|1|a|G|2027
8G6Y|1|a|U|2028
8G6Y|1|a|G|2029
8G6Y|1|a|6MZ|2030
8G6Y|1|a|A|2031
8G6Y|1|a|G|2032
8G6Y|1|a|A|2033
8G6Y|1|a|U|2034
8G6Y|1|a|G|2035
8G6Y|1|a|C|2036

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain q

Ribosomal protein L21

Chain z

50S ribosomal protein L32