HL_8G6Y_069

3D structure

PDB id

8G6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

8G6Y|1|a|U|2797, 8G6Y|1|a|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G6Y_069 not in the Motif Atlas

Homologous match to HL_5J7L_200

Geometric discrepancy: 0.1998

The information below is about HL_5J7L_200

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8G6Y|1|a|C|2795
8G6Y|1|a|U|2796
8G6Y|1|a|U|2797
8G6Y|1|a|U|2798
8G6Y|1|a|A|2799
8G6Y|1|a|A|2800
8G6Y|1|a|G|2801

Current chains

Chain a

23S rRNA

Nearby chains