HL_8G7Q_105
3D structure
- PDB id
- 8G7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the near-cognate AUG codon (Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- G(5MU)(PSU)CAAGUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8G7Q_105 not in the Motif Atlas
- Homologous match to HL_5UD5_003
- Geometric discrepancy: 0.3066
- The information below is about HL_5UD5_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 96
Unit IDs
8G7Q|1|w|G|53
8G7Q|1|w|5MU|54
8G7Q|1|w|PSU|55
8G7Q|1|w|C|56
8G7Q|1|w|A|57
8G7Q|1|w|A|58
8G7Q|1|w|G|59
8G7Q|1|w|U|60
8G7Q|1|w|C|61
Current chains
- Chain w
- Isoleucine tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain J
- 50S ribosomal protein L11
- Chain z
- Elongation factor Tu
Coloring options: