HL_8G7Q_109

3D structure

PDB id

8G7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the near-cognate AUG codon (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGU(OMG)G(H2U)(H2U)AG

Length

10 nucleotides

Bulged bases

8G7Q|1|y|U|16, 8G7Q|1|y|G|18

QA status

Modified nucleotides: OMG, H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G7Q_109 not in the Motif Atlas

Homologous match to HL_3WFS_001

Geometric discrepancy: 0.2176

The information below is about HL_3WFS_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G7Q|1|y|C|13
8G7Q|1|y|A|14
8G7Q|1|y|G|15
8G7Q|1|y|U|16
8G7Q|1|y|OMG|17
8G7Q|1|y|G|18
8G7Q|1|y|H2U|19
8G7Q|1|y|H2U|20
8G7Q|1|y|A|21
8G7Q|1|y|G|22

Current chains

Chain y

Isoleucine tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA