HL_8H6E_004
3D structure
- PDB id
- 8H6E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of human exon-defined spliceosome in the late pre-B state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCCUUUUAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8H6E|1|5A|G|37
8H6E|1|5A|C|38
8H6E|1|5A|C|39
8H6E|1|5A|U|40
8H6E|1|5A|U|41
8H6E|1|5A|U|42
8H6E|1|5A|U|43
8H6E|1|5A|A|44
8H6E|1|5A|C|45
Current chains
- Chain 5A
- U5 snRNA
Nearby chains
- Chain 4F
- Thioredoxin-like protein 4A
- Chain 4G
- Pre-mRNA-processing factor 6
- Chain 4U
- Probable ATP-dependent RNA helicase DDX23
- Chain 5B
- Pre-mRNA-processing-splicing factor 8
- Chain 5D
- U5 small nuclear ribonucleoprotein 200 kDa helicase
- Chain A
- pre-mRNA
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