HL_8H6L_002

3D structure

PDB id

8H6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human exon-defined spliceosome in the early B state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUAUUGCAGUACCUC

Length

15 nucleotides

Bulged bases

8H6L|1|2A|C|164, 8H6L|1|2A|U|167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8H6L|1|2A|G|158
8H6L|1|2A|U|159
8H6L|1|2A|A|160
8H6L|1|2A|U|161
8H6L|1|2A|U|162
8H6L|1|2A|G|163
8H6L|1|2A|C|164
8H6L|1|2A|A|165
8H6L|1|2A|G|166
8H6L|1|2A|U|167
8H6L|1|2A|A|168
8H6L|1|2A|C|169
8H6L|1|2A|C|170
8H6L|1|2A|U|171
8H6L|1|2A|C|172

Current chains

Chain 2A

U2 snRNA

Nearby chains

Chain 2C

U2 small nuclear ribonucleoprotein B''

Chain 2f

Small nuclear ribonucleoprotein G