HL_8HK1_004

3D structure

PDB id

8HK1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of human pre-17S U2 snRNP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUAUUGCAGUACCUC

Length

15 nucleotides

Bulged bases

8HK1|1|H|U|167

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8HK1|1|H|G|158
8HK1|1|H|U|159
8HK1|1|H|A|160
8HK1|1|H|U|161
8HK1|1|H|U|162
8HK1|1|H|G|163
8HK1|1|H|C|164
8HK1|1|H|A|165
8HK1|1|H|G|166
8HK1|1|H|U|167
8HK1|1|H|A|168
8HK1|1|H|C|169
8HK1|1|H|C|170
8HK1|1|H|U|171
8HK1|1|H|C|172

Current chains

Chain H

U2 snRNA

Nearby chains

Chain G

U2 small nuclear ribonucleoprotein B''

Chain e

Small nuclear ribonucleoprotein Sm D3

Chain f

Small nuclear ribonucleoprotein-associated proteins B and B'