HL_8HL4_035

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

GGUUUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL4_035 not in the Motif Atlas

Geometric match to HL_7A0S_011

Geometric discrepancy: 0.3274

The information below is about HL_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8HL4|1|A23S|G|124
8HL4|1|A23S|G|125
8HL4|1|A23S|U|126
8HL4|1|A23S|U|127
8HL4|1|A23S|U|128
8HL4|1|A23S|C|129

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L23P

50S ribosomal protein L23

Chain L29P

50S ribosomal protein L29