HL_8HL4_039

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

GGGCGAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL4_039 not in the Motif Atlas

Geometric match to HL_5TBW_003

Geometric discrepancy: 0.2418

The information below is about HL_5TBW_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

8HL4|1|A23S|G|225
8HL4|1|A23S|G|226
8HL4|1|A23S|G|227
8HL4|1|A23S|C|228
8HL4|1|A23S|G|229
8HL4|1|A23S|A|230
8HL4|1|A23S|C|231

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L15P

50S ribosomal protein L15

Chain L44E

50S ribosomal protein L44e