HL_8HL4_040

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

UGAUAAG

Length

7 nucleotides

Bulged bases

8HL4|1|A23S|U|268

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL4_040 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3257

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8HL4|1|A23S|U|265
8HL4|1|A23S|G|266
8HL4|1|A23S|A|267
8HL4|1|A23S|U|268
8HL4|1|A23S|A|269
8HL4|1|A23S|A|270
8HL4|1|A23S|G|271

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L15E

50S ribosomal protein L15e