HL_8HL4_043

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

CUGGUUUG

Length

8 nucleotides

Bulged bases

8HL4|1|A23S|U|433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL4_043 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.0846

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8HL4|1|A23S|C|428
8HL4|1|A23S|U|429
8HL4|1|A23S|G|430
8HL4|1|A23S|G|431
8HL4|1|A23S|U|432
8HL4|1|A23S|U|433
8HL4|1|A23S|U|434
8HL4|1|A23S|G|435

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L15E

50S ribosomal protein L15e

Chain L44E

50S ribosomal protein L44e