HL_8HL4_046

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

CGGAAGG

Length

7 nucleotides

Bulged bases

8HL4|1|A23S|G|536

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL4_046 not in the Motif Atlas

Geometric match to HL_2R8S_001

Geometric discrepancy: 0.1378

The information below is about HL_2R8S_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

8HL4|1|A23S|C|531
8HL4|1|A23S|G|532
8HL4|1|A23S|G|533
8HL4|1|A23S|A|534
8HL4|1|A23S|A|535
8HL4|1|A23S|G|536
8HL4|1|A23S|G|537

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L22P

50S ribosomal protein L22

Chain L39E

50S ribosomal protein L39e