HL_8HL4_047

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL4_047 not in the Motif Atlas

Geometric match to HL_4LVW_002

Geometric discrepancy: 0.151

The information below is about HL_4LVW_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

8HL4|1|A23S|C|616
8HL4|1|A23S|G|617
8HL4|1|A23S|C|618
8HL4|1|A23S|A|619
8HL4|1|A23S|A|620
8HL4|1|A23S|G|621

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain ALX0

50S ribosomal protein L18Ae

Chain L142

50S ribosomal protein L14e