HL_8HL4_057

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

CGUAAGG

Length

7 nucleotides

Bulged bases

8HL4|1|A23S|G|1098

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL4_057 not in the Motif Atlas

Geometric match to HL_5BTM_001

Geometric discrepancy: 0.158

The information below is about HL_5BTM_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

8HL4|1|A23S|C|1093
8HL4|1|A23S|G|1094
8HL4|1|A23S|U|1095
8HL4|1|A23S|A|1096
8HL4|1|A23S|A|1097
8HL4|1|A23S|G|1098
8HL4|1|A23S|G|1099

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L10E

50S ribosomal protein L10e