HL_8HL4_059

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

CCCAGCAGCAG

Length

11 nucleotides

Bulged bases

8HL4|1|A23S|A|1210

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL4_059 not in the Motif Atlas

Geometric match to HL_3CUL_003

Geometric discrepancy: 0.3128

The information below is about HL_3CUL_003

Detailed Annotation

T-loop related

Broad Annotation

T-loop related

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8HL4|1|A23S|C|1204
8HL4|1|A23S|C|1205
8HL4|1|A23S|C|1206
8HL4|1|A23S|A|1207
8HL4|1|A23S|G|1208
8HL4|1|A23S|C|1209
8HL4|1|A23S|A|1210
8HL4|1|A23S|G|1211
8HL4|1|A23S|C|1212
8HL4|1|A23S|A|1213
8HL4|1|A23S|G|1214

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AEFG

Elongation factor 2

Chain L40E

50S ribosomal protein L40E