HL_8HL4_061

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

UACUAG

Length

6 nucleotides

Bulged bases

8HL4|1|A23S|C|1317, 8HL4|1|A23S|A|1319

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL4_061 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1177

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8HL4|1|A23S|U|1315
8HL4|1|A23S|A|1316
8HL4|1|A23S|C|1317
8HL4|1|A23S|U|1318
8HL4|1|A23S|A|1319
8HL4|1|A23S|G|1320

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL4P

50S ribosomal protein L4

Chain L18E

50S ribosomal protein L18e