HL_8HL4_067

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL4_067 not in the Motif Atlas

Geometric match to HL_5TBW_036

Geometric discrepancy: 0.1912

The information below is about HL_5TBW_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8HL4|1|A23S|G|1566
8HL4|1|A23S|G|1567
8HL4|1|A23S|U|1568
8HL4|1|A23S|A|1569
8HL4|1|A23S|A|1570
8HL4|1|A23S|C|1571

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L141

50S ribosomal protein L14e

Chain L30E

50S ribosomal protein L30e

Chain L34E

50S ribosomal protein L34e

Chain L45A

DUF2280 domain-containing protein