HL_8HL4_071

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

CCAUG

Length

5 nucleotides

Bulged bases

8HL4|1|A23S|C|1720, 8HL4|1|A23S|A|1721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL4_071 not in the Motif Atlas

Geometric match to HL_5U30_001

Geometric discrepancy: 0.1393

The information below is about HL_5U30_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.4

Basepair signature

cWW-F

Number of instances in this motif group

48

Unit IDs

8HL4|1|A23S|C|1719
8HL4|1|A23S|C|1720
8HL4|1|A23S|A|1721
8HL4|1|A23S|U|1722
8HL4|1|A23S|G|1723

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL2P

50S ribosomal protein L2

Chain L37A

50S ribosomal protein L37Ae