HL_8HL4_075

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

UUAACAAA

Length

8 nucleotides

Bulged bases

8HL4|1|A23S|U|1877

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL4_075 not in the Motif Atlas

Geometric match to HL_3IVK_003

Geometric discrepancy: 0.2883

The information below is about HL_3IVK_003

Detailed Annotation

Fab BL3-6 binding hairpin with tSW

Broad Annotation

No text annotation

Motif group

HL_64036.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

28

Unit IDs

8HL4|1|A23S|U|1876
8HL4|1|A23S|U|1877
8HL4|1|A23S|A|1878
8HL4|1|A23S|A|1879
8HL4|1|A23S|C|1880
8HL4|1|A23S|A|1881
8HL4|1|A23S|A|1882
8HL4|1|A23S|A|1883

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L19E

50S ribosomal protein L19e

Chain L45A

DUF2280 domain-containing protein