HL_8HL4_083

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

GUGCACAGUC

Length

10 nucleotides

Bulged bases

8HL4|1|A23S|C|2159, 8HL4|1|A23S|A|2160, 8HL4|1|A23S|C|2161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL4_083 not in the Motif Atlas

Geometric match to HL_4WF9_047

Geometric discrepancy: 0.2505

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

8HL4|1|A23S|G|2156
8HL4|1|A23S|U|2157
8HL4|1|A23S|G|2158
8HL4|1|A23S|C|2159
8HL4|1|A23S|A|2160
8HL4|1|A23S|C|2161
8HL4|1|A23S|A|2162
8HL4|1|A23S|G|2163
8HL4|1|A23S|U|2164
8HL4|1|A23S|C|2165

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL3P

50S ribosomal protein L3

Chain L32E

50S ribosomal protein L32e