HL_8HL4_089

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

CGCAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL4_089 not in the Motif Atlas

Geometric match to HL_7RQB_056

Geometric discrepancy: 0.1755

The information below is about HL_7RQB_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12078.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

8HL4|1|A23S|C|2446
8HL4|1|A23S|G|2447
8HL4|1|A23S|C|2448
8HL4|1|A23S|A|2449
8HL4|1|A23S|A|2450
8HL4|1|A23S|G|2451
8HL4|1|A23S|G|2452
8HL4|1|A23S|G|2453

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain APTN

Transfer RNA; tRNA

Chain L10E

50S ribosomal protein L10e

Chain L21E

50S ribosomal protein L21e