HL_8HL4_092

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

CCACACGUGG

Length

10 nucleotides

Bulged bases

8HL4|1|A23S|C|2531, 8HL4|1|A23S|A|2532

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL4_092 not in the Motif Atlas

Geometric match to HL_3IGI_005

Geometric discrepancy: 0.1707

The information below is about HL_3IGI_005

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

8HL4|1|A23S|C|2530
8HL4|1|A23S|C|2531
8HL4|1|A23S|A|2532
8HL4|1|A23S|C|2533
8HL4|1|A23S|A|2534
8HL4|1|A23S|C|2535
8HL4|1|A23S|G|2536
8HL4|1|A23S|U|2537
8HL4|1|A23S|G|2538
8HL4|1|A23S|G|2539

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L15P

50S ribosomal protein L15

Chain L44E

50S ribosomal protein L44e