HL_8HL4_100

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

CUAGAAGAG

Length

9 nucleotides

Bulged bases

8HL4|1|A23S|U|2934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL4_100 not in the Motif Atlas

Geometric match to HL_4V9F_069

Geometric discrepancy: 0.1759

The information below is about HL_4V9F_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.2

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8HL4|1|A23S|C|2933
8HL4|1|A23S|U|2934
8HL4|1|A23S|A|2935
8HL4|1|A23S|G|2936
8HL4|1|A23S|A|2937
8HL4|1|A23S|A|2938
8HL4|1|A23S|G|2939
8HL4|1|A23S|A|2940
8HL4|1|A23S|G|2941

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL3P

50S ribosomal protein L3

Chain L22P

50S ribosomal protein L22

Chain L31E

50S ribosomal protein L31e