HL_8HL4_104

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

8HL4|1|APTN|G|18, 8HL4|1|APTN|U|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL4_104 not in the Motif Atlas

Homologous match to HL_7EQJ_004

Geometric discrepancy: 0.178

The information below is about HL_7EQJ_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

8HL4|1|APTN|C|13
8HL4|1|APTN|A|14
8HL4|1|APTN|G|15
8HL4|1|APTN|U|16
8HL4|1|APTN|C|17
8HL4|1|APTN|G|18
8HL4|1|APTN|G|19
8HL4|1|APTN|U|20
8HL4|1|APTN|A|21
8HL4|1|APTN|G|22

Current chains

Chain APTN

tRNA (76-MER)

Nearby chains

Chain A23S

Large subunit ribosomal RNA; LSU rRNA

Chain AL5P

50S ribosomal protein L5