HL_8HSP_025

3D structure

PDB id

8HSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

8HSP|1|A|C|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HSP_025 not in the Motif Atlas

Homologous match to HL_6CZR_097

Geometric discrepancy: 0.2364

The information below is about HL_6CZR_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8HSP|1|A|G|1134
8HSP|1|A|U|1135
8HSP|1|A|C|1136
8HSP|1|A|C|1137
8HSP|1|A|G|1138
8HSP|1|A|G|1139
8HSP|1|A|C|1140

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S9