3D structure

PDB id
8HSP (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.32 Å

Loop

Sequence
CUGCAACUCG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8HSP_028 not in the Motif Atlas
Homologous match to HL_4LFB_029
Geometric discrepancy: 0.0764
The information below is about HL_4LFB_029
Detailed Annotation
T-loop with 3 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_02887.3
Basepair signature
cWW-tWH-F-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

8HSP|1|A|C|1314
8HSP|1|A|U|1315
8HSP|1|A|G|1316
8HSP|1|A|C|1317
8HSP|1|A|A|1318
8HSP|1|A|A|1319
8HSP|1|A|C|1320
8HSP|1|A|U|1321
8HSP|1|A|C|1322
8HSP|1|A|G|1323

Current chains

Chain A
16S rRNA

Nearby chains

Chain M
30S ribosomal protein S13
Chain N
30S ribosomal protein S14
Chain S
30S ribosomal protein S19

Coloring options:


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