HL_8HSP_071

3D structure

PDB id

8HSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

8HSP|1|a|C|1493, 8HSP|1|a|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HSP_071 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.1132

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8HSP|1|a|G|1492
8HSP|1|a|C|1493
8HSP|1|a|A|1494
8HSP|1|a|A|1495
8HSP|1|a|A|1496
8HSP|1|a|U|1497
8HSP|1|a|C|1498

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2