HL_8HTZ_012

3D structure

PDB id

8HTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

8HTZ|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HTZ_012 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2658

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8HTZ|1|A|G|462
8HTZ|1|A|U|463
8HTZ|1|A|U|464
8HTZ|1|A|A|465
8HTZ|1|A|A|466
8HTZ|1|A|U|467
8HTZ|1|A|A|468
8HTZ|1|A|C|469
8HTZ|1|A|C|470

Current chains

Chain A

16S rRNA

Nearby chains