3D structure

PDB id
8HTZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GAUCAGAAUGC
Length
11 nucleotides
Bulged bases
8HTZ|1|A|U|1364
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8HTZ_029 not in the Motif Atlas
Homologous match to HL_4LFB_030
Geometric discrepancy: 0.0833
The information below is about HL_4LFB_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_06226.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8HTZ|1|A|G|1356
8HTZ|1|A|A|1357
8HTZ|1|A|U|1358
8HTZ|1|A|C|1359
8HTZ|1|A|A|1360
8HTZ|1|A|G|1361
8HTZ|1|A|A|1362
8HTZ|1|A|A|1363
8HTZ|1|A|U|1364
8HTZ|1|A|G|1365
8HTZ|1|A|C|1366

Current chains

Chain A
16S rRNA

Nearby chains

Chain C
30S ribosomal protein S3
Chain I
30S ribosomal protein S9
Chain J
30S ribosomal protein S10
Chain N
30S ribosomal protein S14

Coloring options:


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