3D structure

PDB id
8HTZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
G(PSU)GCUAACGU
Length
10 nucleotides
Bulged bases
8HTZ|1|a|U|958, 8HTZ|1|a|C|961
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8HTZ_063 not in the Motif Atlas
Homologous match to HL_5J7L_159
Geometric discrepancy: 0.0719
The information below is about HL_5J7L_159
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8HTZ|1|a|G|954
8HTZ|1|a|PSU|955
8HTZ|1|a|G|956
8HTZ|1|a|C|957
8HTZ|1|a|U|958
8HTZ|1|a|A|959
8HTZ|1|a|A|960
8HTZ|1|a|C|961
8HTZ|1|a|G|962
8HTZ|1|a|U|963

Current chains

Chain a
23S rRNA

Nearby chains

Chain b
5S ribosomal RNA; 5S rRNA
Chain l
50S ribosomal protein L16

Coloring options:


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