3D structure

PDB id
8HTZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
AGUUCAUAU
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8HTZ_093 not in the Motif Atlas
Homologous match to HL_5J7L_193
Geometric discrepancy: 0.171
The information below is about HL_5J7L_193
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_32735.2
Basepair signature
cWW-tSH-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

8HTZ|1|a|A|2471
8HTZ|1|a|G|2472
8HTZ|1|a|U|2473
8HTZ|1|a|U|2474
8HTZ|1|a|C|2475
8HTZ|1|a|A|2476
8HTZ|1|a|U|2477
8HTZ|1|a|A|2478
8HTZ|1|a|U|2479

Current chains

Chain a
23S rRNA

Nearby chains

Chain 3
50S ribosomal protein L36
Chain X
Transfer RNA; tRNA
Chain g
50S ribosomal protein L6

Coloring options:


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