3D structure

PDB id
8HU1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.69 Å

Loop

Sequence
CAUGCCG
Length
7 nucleotides
Bulged bases
8HU1|1|b|G|41
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8HU1_103 not in the Motif Atlas
Homologous match to HL_7RQB_070
Geometric discrepancy: 0.0906
The information below is about HL_7RQB_070
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_87939.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
8

Unit IDs

8HU1|1|b|C|38
8HU1|1|b|A|39
8HU1|1|b|U|40
8HU1|1|b|G|41
8HU1|1|b|C|42
8HU1|1|b|C|43
8HU1|1|b|G|44

Current chains

Chain b
5S rRNA

Nearby chains

Chain 4
50S ribosomal protein L31
Chain a
Large subunit ribosomal RNA; LSU rRNA
Chain f
50S ribosomal protein L5
Chain n
50S ribosomal protein L18

Coloring options:


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