HL_8I9R_019

3D structure

PDB id

8I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAGACUAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8I9R|1|C1|A|895
8I9R|1|C1|A|896
8I9R|1|C1|G|897
8I9R|1|C1|A|898
8I9R|1|C1|C|899
8I9R|1|C1|U|900
8I9R|1|C1|A|901
8I9R|1|C1|A|902
8I9R|1|C1|U|903

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain Cf

60S ribosome biogenesis protein Rrp14