HL_8I9R_021

3D structure

PDB id

8I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAAAGCUUUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9R_021 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3471

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8I9R|1|C1|U|976
8I9R|1|C1|A|977
8I9R|1|C1|A|978
8I9R|1|C1|A|979
8I9R|1|C1|G|980
8I9R|1|C1|C|981
8I9R|1|C1|U|1032
8I9R|1|C1|U|1033
8I9R|1|C1|U|1034
8I9R|1|C1|A|1035
8I9R|1|C1|A|1036

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LS

60S ribosomal protein L20

Chain LT

60S ribosomal protein l21-like protein