HL_8I9R_025

3D structure

PDB id

8I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUUA

Length

5 nucleotides

Bulged bases

8I9R|1|C1|U|1202, 8I9R|1|C1|U|1203

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9R_025 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.1675

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8I9R|1|C1|U|1200
8I9R|1|C1|C|1201
8I9R|1|C1|U|1202
8I9R|1|C1|U|1203
8I9R|1|C1|A|1269

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LS

60S ribosomal protein L20