HL_8I9R_028

3D structure

PDB id

8I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAGGUGAACAGCC

Length

14 nucleotides

Bulged bases

8I9R|1|C1|C|1845

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8I9R|1|C1|G|1448
8I9R|1|C1|A|1449
8I9R|1|C1|A|1450
8I9R|1|C1|G|1839
8I9R|1|C1|G|1840
8I9R|1|C1|U|1841
8I9R|1|C1|G|1842
8I9R|1|C1|A|1843
8I9R|1|C1|A|1844
8I9R|1|C1|C|1845
8I9R|1|C1|A|1846
8I9R|1|C1|G|1847
8I9R|1|C1|C|1848
8I9R|1|C1|C|1849

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain Cf

60S ribosome biogenesis protein Rrp14

Chain Cg

Brix domain-containing protein