HL_8I9T_005
3D structure
- PDB id
- 8I9T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUGGAACG
- Length
- 8 nucleotides
- Bulged bases
- 8I9T|1|C1|C|193
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8I9T_005 not in the Motif Atlas
- Homologous match to HL_8C3A_005
- Geometric discrepancy: 0.1281
- The information below is about HL_8C3A_005
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_58705.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
8I9T|1|C1|C|187
8I9T|1|C1|U|188
8I9T|1|C1|G|189
8I9T|1|C1|G|190
8I9T|1|C1|A|191
8I9T|1|C1|A|192
8I9T|1|C1|C|193
8I9T|1|C1|G|194
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain Cd
- Brix domain-containing protein
- Chain Ce
- Protein MAK16
- Chain LY
- 60S ribosomal protein L26-like protein
- Chain Le
- 60S ribosomal protein L32-like protein
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