HL_8I9T_010

3D structure

PDB id

8I9T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9T_010 not in the Motif Atlas

Homologous match to HL_8C3A_010

Geometric discrepancy: 0.0906

The information below is about HL_8C3A_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8I9T|1|C1|A|349
8I9T|1|C1|G|350
8I9T|1|C1|U|351
8I9T|1|C1|G|352
8I9T|1|C1|A|353
8I9T|1|C1|U|354

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LC

60S ribosomal protein L4-like protein

Chain Lj

Ribosomal protein L37