HL_8I9T_020

3D structure

PDB id

8I9T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAACAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9T_020 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3786

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

8I9T|1|C1|U|795
8I9T|1|C1|G|796
8I9T|1|C1|A|797
8I9T|1|C1|A|798
8I9T|1|C1|C|799
8I9T|1|C1|A|906
8I9T|1|C1|A|907

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain Lj

Ribosomal protein L37