HL_8I9T_022

3D structure

PDB id

8I9T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCGAAUGAAC

Length

10 nucleotides

Bulged bases

8I9T|1|C1|G|982

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8I9T|1|C1|G|980
8I9T|1|C1|C|981
8I9T|1|C1|G|982
8I9T|1|C1|A|983
8I9T|1|C1|A|984
8I9T|1|C1|U|985
8I9T|1|C1|G|986
8I9T|1|C1|A|1029
8I9T|1|C1|A|1030
8I9T|1|C1|C|1031

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CL

Putative GTP binding protein

Chain Cz

rRNA-processing protein

Chain LS

60S ribosomal protein L20