HL_8I9T_030
3D structure
- PDB id
- 8I9T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGGAACGGGC
- Length
- 10 nucleotides
- Bulged bases
- 8I9T|1|C1|G|2333, 8I9T|1|C1|A|2335, 8I9T|1|C1|G|2338
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8I9T_030 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.2001
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8I9T|1|C1|G|2331
8I9T|1|C1|G|2332
8I9T|1|C1|G|2333
8I9T|1|C1|A|2334
8I9T|1|C1|A|2335
8I9T|1|C1|C|2336
8I9T|1|C1|G|2337
8I9T|1|C1|G|2338
8I9T|1|C1|G|2339
8I9T|1|C1|C|2340
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain CL
- Putative GTP binding protein
- Chain Le
- 60S ribosomal protein L32-like protein
- Chain Lf
- 60S ribosomal protein l33-like protein
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