HL_8I9T_043

3D structure

PDB id

8I9T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCAGACGAC

Length

9 nucleotides

Bulged bases

8I9T|1|C1|C|3244

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9T_043 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.2135

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

8I9T|1|C1|G|3243
8I9T|1|C1|C|3244
8I9T|1|C1|A|3245
8I9T|1|C1|G|3246
8I9T|1|C1|A|3247
8I9T|1|C1|C|3248
8I9T|1|C1|G|3249
8I9T|1|C1|A|3250
8I9T|1|C1|C|3251

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LB

60S ribosomal protein L3-like protein

Chain LP

60S ribosomal protein l17-like protein