HL_8I9T_046

3D structure

PDB id

8I9T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9T_046 not in the Motif Atlas

Geometric match to HL_5TBW_074

Geometric discrepancy: 0.236

The information below is about HL_5TBW_074

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8I9T|1|C2|U|73
8I9T|1|C2|U|74
8I9T|1|C2|G|75
8I9T|1|C2|C|76
8I9T|1|C2|A|77
8I9T|1|C2|G|78

Current chains

Chain C2

RNA (256-MER)

Nearby chains

Chain Cd

Brix domain-containing protein

Chain LY

60S ribosomal protein L26-like protein

Chain Lh

dolichyl-diphosphooligosaccharide--protein glycotransferase