HL_8I9T_048

3D structure

PDB id

8I9T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9T_048 not in the Motif Atlas

Homologous match to HL_5TBW_076

Geometric discrepancy: 0.2424

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8I9T|1|C2|G|124
8I9T|1|C2|U|125
8I9T|1|C2|A|126
8I9T|1|C2|U|127
8I9T|1|C2|U|128
8I9T|1|C2|C|129

Current chains

Chain C2

RNA (256-MER)

Nearby chains

Chain CC

Ribosome biogenesis protein ERB1

Chain CJ

Pescadillo homolog