HL_8I9V_021

3D structure

PDB id

8I9V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

8I9V|1|C1|A|943

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9V_021 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.274

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8I9V|1|C1|C|939
8I9V|1|C1|C|940
8I9V|1|C1|U|941
8I9V|1|C1|C|942
8I9V|1|C1|A|943
8I9V|1|C1|G|944

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CU

rRNA-processing protein EBP2

Chain Cf

60S ribosome biogenesis protein Rrp14