HL_8I9V_032

3D structure

PDB id

8I9V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAGCUUCGGCGCCAGUGAAAUAC

Length

24 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8I9V|1|C1|G|2428
8I9V|1|C1|G|2429
8I9V|1|C1|A|2430
8I9V|1|C1|G|2431
8I9V|1|C1|C|2432
8I9V|1|C1|U|2433
8I9V|1|C1|U|2434
8I9V|1|C1|C|2435
8I9V|1|C1|G|2436
8I9V|1|C1|G|2437
8I9V|1|C1|C|2438
8I9V|1|C1|G|2439
8I9V|1|C1|C|2440
8I9V|1|C1|C|2441
8I9V|1|C1|A|2442
8I9V|1|C1|G|2443
8I9V|1|C1|U|2444
8I9V|1|C1|G|2445
8I9V|1|C1|A|2446
8I9V|1|C1|A|2447
8I9V|1|C1|A|2448
8I9V|1|C1|U|2449
8I9V|1|C1|A|2450
8I9V|1|C1|C|2451

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CP

RNA methyltransferase nop2-like protein

Chain Lq

Ribosomal protein