HL_8I9W_002

3D structure

PDB id

8I9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAACAG

Length

6 nucleotides

Bulged bases

8I9W|1|C1|A|73

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9W_002 not in the Motif Atlas

Homologous match to HL_8C3A_002

Geometric discrepancy: 0.233

The information below is about HL_8C3A_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

8I9W|1|C1|C|69
8I9W|1|C1|A|70
8I9W|1|C1|A|71
8I9W|1|C1|C|72
8I9W|1|C1|A|73
8I9W|1|C1|G|74

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CA

Brix domain-containing protein

Chain LL

60S ribosomal protein L13

Chain LN

Ribosomal protein L15

Chain Li

60S ribosomal protein L36